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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42336596_42336841_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42336596 - 42336841
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGCAGC
Flanking Amino Acid:
KAHSPEAALQRLLEANRHLT
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
33.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
76.3
0.59
0.9
66.9
39.9
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
43.2
-0.5
2.3
63.54
42

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109