About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42336922_42337266_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42336922 - 42337266
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACTCATGGAAAC
Flanking Amino Acid:
LQRGATETPAGLVYNRDMRV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.2
39.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.9
0.74
0.9
77.1
37.1
Minor 5ss
29.7
-2.3
3.5
37.8
42.4
Minor BPS
37.7
-0.9
2
45.34
36.3

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109