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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42337302_42338074_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42337302 - 42338074
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGGT
5'SS Class:
major
3'SS Sequence:
TTTGCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TGTCTTTGCACC
Flanking Amino Acid:
VYNRDMRVRTQSRESLTVEQ
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67.4
44
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
78
0.63
0.9
71
34.9
Minor 5ss
38.5
-1.3
3.5
56.3
47.9
Minor BPS
47
-0.2
1.8
60.9
38.3

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109