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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42338152_42338702_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42338152 - 42338702
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCGCTCTTATTT
Flanking Amino Acid:
QKIQDRVLIILARDGLLVPH
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.1
36.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
29.2
-2.4
3.2
37
41.8
Minor BPS
55.2
0.24
1.6
68.34
43.3

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109