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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42338797_42339204_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42338797 - 42339204
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTTATC
Flanking Amino Acid:
REAFEHTLKEHIQLVEVPGS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
59.4
0.28
1.6
65.55
41

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109