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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42342732_42342923_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42342732 - 42342923
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTGGACATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATTGTTATCT
Flanking Amino Acid:
DSHPVKTGVSKPD*
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
66.7
0.38
1
59.7
41.3
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
54.8
0.23
2.3
80.16
41.9

Associated Gene:

Gene:
RRP7A
Ensembl Gene ID:
ENSAPLG00000019138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031626
42342622 - 42343806
1185