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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42343048_42343309_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42343048 - 42343309
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGCTC
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GTGTATCTGACT
Flanking Amino Acid:
SKFFGRRTATGFRVAYVVFK
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
59.1
45.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
84.9
0.79
0.7
80.9
24.3
Minor 5ss
41.3
-1
3.4
60.2
44.5
Minor BPS
48.9
-0
1.9
69.57
41.3

Associated Gene:

Gene:
RRP7A
Ensembl Gene ID:
ENSAPLG00000019138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031626
42342622 - 42343806
1185