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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42343436_42343526_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
42343436 - 42343526
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCGCACCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTCTCCGCACCA
Flanking Amino Acid:
VLNVPPYCGPGALSRLFGSC
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
55.4
0.12
1.1
52.7
36.1
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
44.4
-0.4
2.4
60.01
45.8

Associated Gene:

Gene:
RRP7A
Ensembl Gene ID:
ENSAPLG00000019138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031626
42342622 - 42343806
1185