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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42352150_42354606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42352150 - 42354606
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTTGTAAACT
Flanking Amino Acid:
NVVNNHTHKQGLYDMEDDDE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71
32.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.1
0.72
0.8
80.3
31.7
Minor 5ss
34.6
-1.8
3.1
44.1
43.8
Minor BPS
52.8
0.17
2.3
78.66
44.1

Associated Gene:

Gene:
POLDIP3
Ensembl Gene ID:
ENSAPLG00000005154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005365
42347622 - 42358291
10670