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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42356946_42358229_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42356946 - 42358229
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTACTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATGTCTGAACT
Flanking Amino Acid:
EERPVLKKSDRLNTRPVFGG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.3
67
42.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33
-1.9
3.7
45.9
42.2
Minor BPS
62.3
0.46
1.5
76.27
40

Associated Gene:

Gene:
POLDIP3
Ensembl Gene ID:
ENSAPLG00000005154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005365
42347622 - 42358291
10670