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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42387669_42389873_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42387669 - 42389873
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTCAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCCTCTCAATT
Flanking Amino Acid:
ENFKMRLYNTKVTSGMEMEA
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71
40.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.6
0.51
0.8
66.7
33
Minor 5ss
41.7
-0.9
2.6
51.2
45.4
Minor BPS
62.3
0.46
1.5
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005288
42387228 - 42392510
5283