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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42390610_42391464_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42390610 - 42391464
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTAACTTGATT
Flanking Amino Acid:
GIQYIVVDCGGGTIDITVHE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
67.3
0.39
1.1
61.9
44.3
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
61.8
0.45
1.6
76.77
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005288
42387228 - 42392510
5283