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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42398404_42400584_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42398404 - 42400584
Intron Length:
2181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATTTCTCCACA
Flanking Amino Acid:
AEDNGTAVLVRMFTEHPDTK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.5
0.64
0.8
72.6
31.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
49.6
-0
2
64.13
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005066
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005230
42398309 - 42401735
3427