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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42400817_42401606_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42400817 - 42401606
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TCTCCCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
AATTTCACACTG
Flanking Amino Acid:
QLKVDPKNFRIICDIILQMM
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
55.8
44.9
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
74.3
0.55
0.8
73.1
31.7
Minor 5ss
31.3
-2.1
3
30.2
42.9
Minor BPS
42
-0.7
1.9
47.79
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005066
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005230
42398309 - 42401735
3427