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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42416501_42421249_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42416501 - 42421249
Intron Length:
4749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAATACT
5'SS Class:
major
3'SS Sequence:
CTGCACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCTCAAACT
Flanking Amino Acid:
ERSRERSSKKRSSKERSSRD
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.1
36.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.8
0.6
0.9
72.9
37
Minor 5ss
38.2
-1.3
2.9
53.2
43.5
Minor BPS
54.2
0.21
2
76.29
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004589
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023311
42416308 - 42441540
25233
ENSAPLT00000004749
42415453 - 42439044
23592