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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42421445_42422308_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42421445 - 42422308
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
AGTGTCTGAATT
Flanking Amino Acid:
RSRSHSKHTKRSRSRDRRRH
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
62
0.3
1.4
71.9
41
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
57.4
0.31
1.5
71.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004589
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004749
42415453 - 42439044
23592