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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42422339_42423179_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42422339 - 42423179
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATC
5'SS Class:
strong_major
3'SS Sequence:
CCATTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTGATTTACCA
Flanking Amino Acid:
REREEREKLRRSRSHSKHTK
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77
35.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.7
0.65
0.9
76.1
37.6
Minor 5ss
35.4
-1.7
3.5
50.7
46.2
Minor BPS
50.4
0.01
1.9
66.2
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004589
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004749
42415453 - 42439044
23592