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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42461609_42462727_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42461609 - 42462727
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTCTAAATT
Flanking Amino Acid:
LPAHLQQAYTDGGQSKGDTK
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.5
0.62
0.9
70.8
38.5
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
69
0.67
1.6
83.97
37.3

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308