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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42462818_42463600_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42462818 - 42463600
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
CTTTTTACCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTTTTTACCC
Flanking Amino Acid:
SAAFHHSLTQNLLKGLQPGA
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
62.2
38.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.3
0.7
0.8
74.1
35.3
Minor 5ss
27.9
-2.5
3
27.5
37.6
Minor BPS
57.9
0.23
1.6
64.58
42.1

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308