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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42463848_42467259_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42463848 - 42467259
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AAATCTTGAAGT
Flanking Amino Acid:
GSPVVAASVQSTAGASLLAN
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
84.4
0.77
0.8
79.9
32.1
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
54.2
0.21
1.7
69.52
41

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308