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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42470093_42473589_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42470093 - 42473589
Intron Length:
3497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ACCACTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACCA
Flanking Amino Acid:
PLWPKGWMQARMLFKESRSV
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.9
0.49
0.9
61.6
39.3
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
56.4
0.2
1.9
70.77
41.8

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308