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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42473734_42474697_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42473734 - 42474697
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCTTTCAATA
Flanking Amino Acid:
RKKFHWDDTVRSLLCNLVKI
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
61.2
0.35
1.5
72.41
33.6

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308