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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42474812_42475428_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42474812 - 42475428
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
GTTCTAAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAATA
Flanking Amino Acid:
CQARNQAKNAKSQAEDEREK
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
80.7
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.2
0.36
1
59.8
39.9
Minor 5ss
36.5
-1.5
3.2
50.6
40.3
Minor BPS
65.5
0.48
1.6
74.21
38.4

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308