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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42475548_42476875_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42475548 - 42476875
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTTTTTTCACA
Flanking Amino Acid:
RLKKLHLNVQDDRLREPLQK
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
90.6
0.91
0.6
86.8
24
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
63.3
0.41
1.7
73.92
38.7

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308