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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42477006_42477735_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42477006 - 42477735
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
AGTACCTCACTG
Flanking Amino Acid:
FTQDMNNILLDIELQLQEIN
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
77.3
0.62
1
76.9
42.1
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
46.6
-0.4
1.9
51.79
42.7

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308