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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_424788_426396_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
424788 - 426396
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATCTGATAGCT
Flanking Amino Acid:
AFPNELSLQQAFSEYQIQQM
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
73.6
0.53
0.9
72.3
37.4
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
43.2
-0.4
2.3
67.45
42.9

Associated Gene:

Gene:
PPP6R2
Ensembl Gene ID:
ENSAPLG00000003046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048408
381682 - 447727
66046
ENSAPLT00000003179
381682 - 447727
66046