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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42495706_42501433_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42495706 - 42501433
Intron Length:
5728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATGATGTAACA
Flanking Amino Acid:
MLAKKFEAKYSGKPHKHRKD
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
76.5
27.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
37.5
-1.4
2.9
48
41.4
Minor BPS
45.9
-0.3
2.2
59.56
40.3

Associated Gene:

Gene:
UBN2
Ensembl Gene ID:
ENSAPLG00000004433
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004584
42461559 - 42505866
44308