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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42509144_42520617_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42509144 - 42520617
Intron Length:
11474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCAATCTTGATT
Flanking Amino Acid:
FQMILAGREAKMVMALVFWI
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
61.9
0.45
1.3
71.65
39.7

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019018
42508030 - 42566459
58430