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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42519279_42520617_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42519279 - 42520617
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCACATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACACATTTAAAT
Flanking Amino Acid:
FQMILAGREAKETLREVVHL
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.5
0.57
0.8
70
35.3
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
49.7
0.06
1.6
63.24
40.3

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036734
42517607 - 42567236
49630
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000004158
42519167 - 42600453
81287