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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42520752_42524191_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42520752 - 42524191
Intron Length:
3440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GAATACATAATA
Flanking Amino Acid:
LQLIANDCYKMRQFYYAAKA
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.8
0.78
0.8
80.9
29.9
Minor 5ss
35
-1.7
3.1
44.9
36.9
Minor BPS
49.9
-0
1.8
60.91
38.2

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630