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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42529208_42536402_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42529208 - 42536402
Intron Length:
7195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
NVLLYLNSVKSYFYNDDTFN
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630