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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42536492_42542280_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42536492 - 42542280
Intron Length:
5789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TTTTGAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTGAATT
Flanking Amino Acid:
QLVGESASERDTIPGRLCMA
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
67.1
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.1
0.63
0.9
75.5
38.4
Minor 5ss
44.1
-0.6
2.8
55.2
43.3
Minor BPS
59.3
0.37
1.4
71.39
40.7

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630