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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42542345_42542777_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42542345 - 42542777
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCTGGAACT
Flanking Amino Acid:
NAALGQEMISRDHLKIAQQF
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.4
31.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.1
0.68
0.7
73.6
31.4
Minor 5ss
36.3
-1.6
2.9
45.6
43.6
Minor BPS
48.6
-0
2.1
68.18
42.7

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630