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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42542832_42544160_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42542832 - 42544160
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATCCCCTTTACT
Flanking Amino Acid:
IKDLEPTAPQEYILKGVVNA
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
36.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
32.1
-2
3.1
41.4
44.9
Minor BPS
67
0.62
1.6
80.29
41.1

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036734
42517607 - 42567236
49630
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287