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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42547596_42548816_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42547596 - 42548816
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTTGGCATC
5'SS Class:
major
3'SS Sequence:
CTCTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGTCTTTAATC
Flanking Amino Acid:
DIYKRILLDNREYLALNVYV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.3
59.5
45.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.1
0.65
0.8
72.8
32
Minor 5ss
39.4
-1.2
3.1
53.9
43.3
Minor BPS
80.7
0.94
1
81.79
32.9

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036734
42517607 - 42567236
49630
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287