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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42548963_42550651_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42548963 - 42550651
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGT
5'SS Class:
major
3'SS Sequence:
CCTTCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTCTGAGAAT
Flanking Amino Acid:
NRLLFHLAHKFSDEKKLMSS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.5
38.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.3
0.64
0.8
76.4
32.2
Minor 5ss
45.1
-0.5
3
65.2
46
Minor BPS
44.2
-0.3
2.4
67.24
44.2

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630
ENSAPLT00000034811
42548941 - 42566459
17519
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430