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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42550702_42565754_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42550702 - 42565754
Intron Length:
15053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACTTACTTAATG
Flanking Amino Acid:
HLGDYKRALEHLRVVSRTVY
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
84.4
0.77
0.7
81.5
29.7
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
66.4
0.38
1.6
66.68
41.3

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034811
42548941 - 42566459
17519