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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42558361_42565754_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42558361 - 42565754
Intron Length:
7394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTGTTACA
Flanking Amino Acid:
HLGDYKRALEEYEALTKKTD
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
51.2
0.03
2.3
70.62
41.9

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328
ENSAPLT00000019018
42508030 - 42566459
58430
ENSAPLT00000004158
42519167 - 42600453
81287
ENSAPLT00000036734
42517607 - 42567236
49630