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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42566075_42566177_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42566075 - 42566177
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
GCTCTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCTCCCTGACCC
Flanking Amino Acid:
SGERGPGGRMMLSRAKPAVG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
34.3
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.4
0.48
0.8
61.9
34.8
Minor 5ss
24.2
-3
3.3
28.4
38
Minor BPS
49.8
-0
1.8
60.44
44.6

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029496
42517607 - 42566934
49328