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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42566075_42567229_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42566075 - 42567229
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCTCCCTGACCC
Flanking Amino Acid:
MTDALQGQAGRG
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.4
0.48
0.8
61.9
34.8
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
49.8
-0
1.8
60.44
44.6

Associated Gene:

Gene:
TTC26
Ensembl Gene ID:
ENSAPLG00000004028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036734
42517607 - 42567236
49630