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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42579372_42580292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42579372 - 42580292
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CATTGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACTTTTACA
Flanking Amino Acid:
ALTTVQEELAGENVTVNATF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.1
0.56
0.9
70.5
39.6
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
61.7
0.36
1.7
71.84
40.1

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402