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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42581860_42584222_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42581860 - 42584222
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACATTCAGACCT
Flanking Amino Acid:
ACTYATYQMVSVETILSLPL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
66.1
0.4
1
73
31.5
Major PPT
79.7
0.67
0.7
77.3
24.7
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
44.3
-0.3
1.9
60.69
42.6

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402