About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42584439_42586437_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42584439 - 42586437
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTCAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CTGCCTTCAATC
Flanking Amino Acid:
KQNENSEECLWYMNALDAGV
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
33.2
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
67.8
0.4
1
67
38.3
Minor 5ss
39.3
-1.2
3
49.1
41.1
Minor BPS
52.7
0.07
1.6
59.53
40.3

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402