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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42586560_42587371_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42586560 - 42587371
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
GCTCAATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTTGCTCAATC
Flanking Amino Acid:
VVKDPNRKSNVIIMCGTPAD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
60.5
44.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
66.3
0.37
0.9
58.9
36.9
Minor 5ss
31.6
-2.1
3.9
42.2
46.3
Minor BPS
57.2
0.21
2
70.19
41.8

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402