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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42590748_42592853_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42590748 - 42592853
Intron Length:
2106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
GCCTTCTTGACT
Flanking Amino Acid:
INEFRNTTFEGAQGPVTLDA
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
74.8
0.56
0.9
68.2
37.6
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
69
0.68
1.3
75.06
42.1

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402