About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42592940_42593392_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42592940 - 42593392
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTACACCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CATTTCTTCACT
Flanking Amino Acid:
VLYTSQSTNEFRVLLYFDTH
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
65.9
0.36
0.9
57.7
32.1
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
66
0.58
1.8
80.35
41.7

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402