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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42597916_42599758_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42597916 - 42599758
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAACT
5'SS Class:
major
3'SS Sequence:
ACTTGTTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATTCTGAAGT
Flanking Amino Acid:
LVLIISLLILRKYRRDNERR
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
69.2
41.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.3
0.64
0.9
72.7
36.9
Minor 5ss
40.6
-1.1
3.2
59.4
44.7
Minor BPS
58.8
0.35
1.8
75.92
40.4

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402