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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42600255_42600729_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42600255 - 42600729
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTACTTTCCACT
Flanking Amino Acid:
RLRQGKYDKKVVILKDLKNS
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
47.7
-0.1
1.9
69.98
41

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402