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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42608968_42612631_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42608968 - 42612631
Intron Length:
3664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAAAA
Flanking Amino Acid:
FYSGHCRDTKEKLYRVESGK
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.6
0.67
0.8
78
30.8
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
58.9
0.27
2.1
78.09
38.1

Associated Gene:

Gene:
GUCY2C
Ensembl Gene ID:
ENSAPLG00000002959
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003032
42578930 - 42622331
43402