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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42625896_42633338_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42625896 - 42633338
Intron Length:
7443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTCCCTTGCCT
Flanking Amino Acid:
LLWAAAGGRAEIRYATVYWN
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
69.9
0.45
0.9
64.7
36.6
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
51.5
0.13
3.5
89.05
35.6

Associated Gene:

Gene:
PLBD1
Ensembl Gene ID:
ENSAPLG00000002764
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002814
42625817 - 42662022
36206